Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs72781536 chr16:17444803 G/T 0 289 21.2 27.48 2.63 KM Plot
CESC rs72781554 chr16:17449284 T/G 0 287 21.2 27.48 2.63 KM Plot
CESC rs72798245 chr5:126111236 A/C 0 291 21.2 20.77 1.73 KM Plot
CESC rs72798246 chr5:126117722 G/C 0 293 21.2 20.77 1.73 KM Plot
CESC rs72798247 chr5:126117937 C/G 0 293 21.2 20.77 1.73 KM Plot
CESC rs72798249 chr5:126119281 T/C 0 293 21.2 20.77 1.73 KM Plot
CESC rs72835323 chr10:99013586 T/C 1.7E-7 299 21.33 18.28 5.23 KM Plot
CESC rs72896012 chr1:52082594 G/C 4.32E-5 293 21.13 25.63 16.97 KM Plot
CESC rs72986935 chr3:129143708 C/T 4.76E-5 295 21.47 21.4 11.95 KM Plot
CESC rs72988820 chr3:129182902 G/C 5.09E-5 293 21.2 20.63 14.73 KM Plot
CESC rs73006398 chr19:9723447 A/G 4.25E-14 289 21.97 19.83 3.33 KM Plot
CESC rs73008109 chr19:9734056 C/T 2.54E-14 292 21.97 20.23 3.33 KM Plot
CESC rs73008113 chr19:9738196 C/T 2.54E-14 292 21.97 20.23 3.33 KM Plot
CESC rs73141183 chr3:100289384 T/A 7.74E-6 294 21.73 20.07 12.05 KM Plot
CESC rs73143168 chr3:100326954 G/A 1.37E-5 289 21.85 19.4 12.05 KM Plot